FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006968655

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006968655
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences113440185
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCTGAGT2916558425.710099115229756No Hit
ATAGTTAC2841128225.045165432337757No Hit
GAGCACCG2834828524.98963220132266No Hit
CCTACGTA2608956722.998522966090015No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)