FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006968661

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006968661
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences103446849
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACCCGTT2899373028.0276589188328No Hit
GGAGGAGG2597787425.112291240499747No Hit
TTGTTTCC2568370224.827921051515066No Hit
CCTAACAA2125283920.54469440630328No Hit
TTGTTTCA1685510.16293488069414275No Hit
AACCCGTA1664320.16088648577396494No Hit
CCTAAAAA1122350.1084953298094174No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)