FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006968664

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006968664
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences103782271
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACCCGTT2914879428.086486949201568No Hit
GGAGGAGG2603278925.08404253362311No Hit
TTGTTTCC2573686124.7988994189576No Hit
CCTAACAA2130513620.528685482320963No Hit
TTGTTTCA1693560.16318394111842088No Hit
AACCCGTA1670330.1609456012000354No Hit
CCTAAAAA1121560.1080685544065614No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)