FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006968668

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006968668
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences99428558
Sequences flagged as poor quality0
Sequence length10
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAGACGATT9815929798.72344422414334No Hit
CTAGAAGATT2529950.25444902861811597No Hit
CTAGACGATG1944070.195524308016214No Hit
CTATACGATT1349810.13575677120852944No Hit
NTAGACGATT1086780.10930260096902944No Hit
CGAGACGATT1039190.10451624974788432No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)