FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006968676

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006968676
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences79609992
Sequences flagged as poor quality0
Sequence length10
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAGAGGTCA7860985498.7437029261352No Hit
CGAGAGGTCA1169530.14690743845320323No Hit
CTAGATGTCA971020.12197212631298844No Hit
CTAGAGGTAA878750.11038187266744104No Hit
CTATAGGTCA873480.10971989546236859No Hit
NTAGAGGTCA870290.10931919199288452No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)