FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006968679

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006968679
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences81607322
Sequences flagged as poor quality0
Sequence length10
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTTACTTGC8058097598.74233466452924No Hit
TCTTACTTGA3884190.47596096830625073No Hit
NCTTACTTGC1600980.1961809260203392No Hit
TCATACTTGC974770.11944638987173234No Hit
TATTACTTGC926660.11355108552636982No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)