FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006968697

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006968697
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences116295716
Sequences flagged as poor quality0
Sequence length10
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAGCCCTGT11495943798.85096455315689No Hit
GTAGCCCTGA2760750.23739051574350342No Hit
NTAGCCCTGT2262020.19450587500574829No Hit
GTAGCCCGGT2118020.18212364761570407No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)