FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006968702

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006968702
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences91185704
Sequences flagged as poor quality0
Sequence length10
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAAGTTAGGG8898567797.58731149347709No Hit
GACGTTAGGG4845620.5314012819377915No Hit
GAAGTTATGG3416430.374667283371525No Hit
GTAGTTAGGG3245200.3558891205138911No Hit
GAAGTTAGGT1755560.1925257932975985No Hit
GAAGTTAGTG1248490.1369172957199519No Hit
GAAGATAGGG1139540.12496915086601733No Hit
GAAGTGAGGG988300.10838321761490156No Hit
NAAGTTAGGG944560.10358641306317051No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)