FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006972596

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006972596
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2700362
Sequences flagged as poor quality0
Sequence length9
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCCCCCC167330.6196576607136376No Hit
CCCCCCGCC41860.15501625337639915No Hit
CCCCGCCCC40430.14972066708093212No Hit
CCCCCCCGC34530.127871744603131No Hit
CCCCCGCCC29730.1100963500449199No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)