FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006973088

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006973088
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3364121
Sequences flagged as poor quality0
Sequence length9
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCCCCCC201450.5988191268982299No Hit
CCCCGCCCC50910.1513322499398803No Hit
CCCCCCGCC49800.14803272533895184No Hit
CCCCCCCGC41520.12342005534283695No Hit
CCCCCGCCC36260.10778447029699587No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)