FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006975377

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006975377
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12388822
Sequences flagged as poor quality0
Sequence length65
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGAC688720.5559204902613017No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACACGTT319170.2576273999255135No Hit
ACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGA193720.156366763522795No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCGATACGGAGAGAAGAACGATCATCAATGGCTGAC153420.12383743991155897No Hit
CACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTG149610.1207620869845414No Hit
CCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACACGTTC141150.11393335056391962No Hit
CCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGT125350.10117991847812488No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)