FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006975445

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006975445
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25852753
Sequences flagged as poor quality0
Sequence length65
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGAC620440.23998991519394472No Hit
CCCAGCTTCATCTTCAACGTTGTGGAAAGGGACTGTACATCATGGGGCAGAGCCCTAAGCTCCCC500270.19350743806665385No Hit
CCCAGCTTTATTTCCAACGTTGTGGAAAGGGACTTGTACATCATGGGGCAGAGCCCTATGCTCCC483110.18686984709133297No Hit
ACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGA302810.11712872513035652No Hit
CACTGTTTCTGGAGGGAGATTAGGGTTTCTTGCCAAGATCCAAGCAAAATCCACGTGAAAAAGTT275910.10672364370633951No Hit
CCTGAACATGCCCTGTTCCTACTCTCTCACTCCAGTTACCACAATTTCTCTCCAGCAACTGGAAG271510.10502169730241108No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)