FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006975446

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006975446
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47696358
Sequences flagged as poor quality0
Sequence length65
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGAC1409850.2955886065766279No Hit
CCCAGCTTTATTTCCAACGTTGTGGAAAGGGACTTGTACATCATGGGGCAGAGCCCTATGCTCCC681360.14285367448810243No Hit
CCCAGCTTCATCTTCAACGTTGTGGAAAGGGACTGTACATCATGGGGCAGAGCCCTAAGCTCCCC657640.13788054844774522No Hit
GGCAAGGTAAGTAGTTGGATGAAATCACAGGAAGCATGAATAGTTGTGACCAATTGCAGAAGACT621900.13038731384899452No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACACGTT477880.10019213626331805No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)