FastQCFastQC Report
Wed 8 May 2024
EGAF00006979149

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006979149
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences574841
Total Bases5.1 Mbp
Sequences flagged as poor quality0
Sequence length9
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCCCCCC8950.15569522702799557No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)