FastQCFastQC Report
Thu 27 Oct 2022
EGAF00007019839

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007019839
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences307540960
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATCCTT8367529427.207853549003687No Hit
CAGCTTAC7479589224.320627730368013No Hit
ATTGGACG7464463124.271443712733422No Hit
GGCAAGGA6844535922.255688803208525No Hit
TCATCCTA7577590.24639287072525232No Hit
CAGCTTAA3916140.1273371846143681No Hit
GGCAAGAA3574410.11622549399598675No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)