FastQCFastQC Report
Thu 27 Oct 2022
EGAF00007019843

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007019843
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences272268693
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCACACG7464971727.417664578865114No Hit
AGGGATGA7193502926.420602459791436No Hit
CTTCTGTT6156643722.612382026603402No Hit
GAATGCAC5803127921.31397420708961No Hit
CTTCTGTA8726490.32051022480208546No Hit
TCCACACA3834940.14085130235667603No Hit
AGGGATAA3603200.13233985737757958No Hit
TGGGATGA3439160.12631492670367356No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)