FastQCFastQC Report
Thu 27 Oct 2022
EGAF00007019847

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007019847
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences266971230
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGATA7505013428.111693533419313No Hit
ATGGTCGC6913271225.895191777780703No Hit
GATTCGCT6146478923.023001017750115No Hit
CGACATAG5605326920.99599608542089No Hit
CGACCTAG5823830.21814447946319906No Hit
GATTCGCA3168150.11867009040637075No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)