FastQCFastQC Report
Thu 27 Oct 2022
EGAF00007019851

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007019851
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences275919178
Sequences flagged as poor quality0
Sequence length8
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTATGGAA8514468030.85855815357641No Hit
GACCTCTC6533965023.680720736273No Hit
ACTACTGT5730217120.767737645260745No Hit
CGGGAACG5471338419.829496592658014No Hit
GTCCTCTC55043251.9949048268040288No Hit
GGCCTCTC9003060.32629337566379674No Hit
CGGGACCG6904020.2502189246156713No Hit
TTATGAAA5549900.2011422344843315No Hit
GACCTCTA3772760.1367342432427803No Hit
ACTACTGA3122560.113169371648389No Hit
CGGGAACA2786340.1009839192837839No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)