FastQCFastQC Report
Thu 27 Oct 2022
EGAF00007019855

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007019855
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences253028899
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTATCTGA6791963326.84263863472765No Hit
AGGGACTG6465458325.552252432636163No Hit
CCTCTAAC5848521023.114043585985804No Hit
GACAGGCT5690679422.490234998809367No Hit
TGGGACTG4597700.18170651724647469No Hit
TTATCTAA4271370.16880957143160158No Hit
CCTCTAAA2946340.1164428257659217No Hit
AGGGACTA2577870.10188045753619629No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)