FastQCFastQC Report
Thu 27 Oct 2022
EGAF00007019859

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007019859
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences245554433
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAGGTCT7335978429.87516173247013No Hit
ACGTTCAC6656411627.107682474622642No Hit
TGCCCAGA5952675224.241774531514974No Hit
GTTAAGTG4147526416.89045621913085No Hit
GTTAAGTA4548810.18524650296172826No Hit
ACGTTCAA3019990.12298658033186474No Hit
TGCCCAAA2818520.11478188219065871No Hit
CAAGGTCA2555790.10408242151344098No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)