FastQCFastQC Report
Thu 27 Oct 2022
EGAF00007019863

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007019863
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences277811691
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCTACAT7686423527.667746711206618No Hit
TTTGCGTC6650384923.938463050498477No Hit
ACGCTTGG6490480723.362878202271194No Hit
GAAAGACA6412216823.0811625562583No Hit
ACGCTTGA4985410.17945285103210434No Hit
CGCTACAA3553990.12792802157487318No Hit
TTTGCGTA3305750.11899247249461506No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)