FastQCFastQC Report
Thu 27 Oct 2022
EGAF00007019871

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007019871
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences273127275
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGTACT8709267231.887211557322498No Hit
GGGACTAC7230594026.47335019909674No Hit
TCATGCGA6834874425.024503319926577No Hit
CATCAGTG4023700814.731962598755471No Hit
ATCGTACA4989460.1826789360381529No Hit
CATCAGTA4056450.14851867137765717No Hit
TCATGCAA2992980.10958187899762116No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)