FastQCFastQC Report
Thu 27 Oct 2022
EGAF00007019879

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007019879
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences280570782
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCTACAG7604996727.10544785094551Illumina DpnII expression Adapter 1 (100% over 8bp)
GATGCAGT6789813024.200000269450722No Hit
CCGAGGCA6749109024.05492457871112No Hit
AGACTTTC6400973622.81411326714697No Hit
AGACTTTA3123640.11133162112368493No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)