FastQCFastQC Report
Thu 27 Oct 2022
EGAF00007019883

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007019883
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences279035781
Sequences flagged as poor quality0
Sequence length8
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGTTGAT7721792027.673124831255958No Hit
TTAGATTG6583632523.594223208241527No Hit
GGTCGAGC6530742223.40467654934906No Hit
CCCACCCA6309603222.612165283562685No Hit
GTAGATTG15174740.5438277465928285No Hit
CCCACCAA11574890.4148174101012515No Hit
TTAGATTA4501260.16131479568206344No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)