FastQCFastQC Report
Thu 27 Oct 2022
EGAF00007019891

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007019891
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences264620539
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGACGT7051639426.64811819463492No Hit
TGTTCACG7045829726.626163360660378No Hit
ACCATTAA6506147424.586706022845792No Hit
GAACGGTC5359473720.25343051697132No Hit
ACCATAAA4079090.15414865434916222No Hit
TGTTCACA4022690.15201730051649542No Hit
GAACGGTA3140150.11866614783064894No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)