FastQCFastQC Report
Thu 27 Oct 2022
EGAF00007019911

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007019911
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences571767340
Sequences flagged as poor quality0
Sequence length10
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTTACTTGC56252261498.38313150240445No Hit
TCTTACTTGA22144420.3872977424698654No Hit
TCTTACTGGC16763100.2931804394423788No Hit
TCTTACGTGC8265660.14456334634293733No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)