FastQCFastQC Report
Thu 27 Oct 2022
EGAF00007019923

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007019923
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences560042134
Sequences flagged as poor quality0
Sequence length10
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACTGAGAA55142970998.46218266856329No Hit
GCACTGAGGA8546350.15260191119834565No Hit
GCACTGGGAA8420680.15035797288780417No Hit
GCACTGATAA8086960.1443991355121863No Hit
GCACTGTGAA7118100.1270993657059381No Hit
GCACAGAGAA7107880.12691687943607471No Hit
GCACGGAGAA6585150.11758311741594785No Hit
GCCCTGAGAA5872180.10485246811805056No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)