FastQCFastQC Report
Thu 27 Oct 2022
EGAF00007019952

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007019952
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences429353175
Sequences flagged as poor quality0
Sequence length10
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATTACGTA42369557498.68229668966579No Hit
GCCTTACGTA17009930.3961757124539722No Hit
GCATTACGTN5699080.13273641216231835No Hit
GCATTACGTG4784080.11142528525612977No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)