FastQCFastQC Report
Thu 6 Oct 2022
EGAF00007025482

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007025482
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5943792
Sequences flagged as poor quality0
Sequence length35-101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTGCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCT450800.7584383841157295No Hit
GTTGCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCT344520.5796299735926156No Hit
GGTGCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCT197460.3322121635481188No Hit
ATTGCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCT186720.31414289059913264No Hit
GGGGCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCT181860.30596629222556915No Hit
GTGGCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCT118380.19916578507457866No Hit
TATGCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCT117200.1971805204488986No Hit
TTTACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATAT112760.18971054168786525No Hit
AATGCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCT101820.1713047832091029No Hit
TTAACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATAT99780.16787263080538484No Hit
GATGCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCT98380.1655172320969509No Hit
TTAGCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCT93480.15727333661743212No Hit
CGGGCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCT90180.1517213253761235No Hit
TGTGCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCT78940.13281083860269674No Hit
GTAGCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCT78690.13239023169047637No Hit
TAAGCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCT70280.11824101516338392No Hit
CTTGCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCT67680.11386670327629231No Hit
GAAGCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCT63060.10609388753846029No Hit
AGTGCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCT61050.10271220796420871No Hit
CGTGCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCT60100.10111390169777137No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)