FastQCFastQC Report
Wed 28 Jun 2023
EGAF00007040359

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007040359
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443219
Sequences flagged as poor quality0
Sequence length11-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG8930.20148053219740128No Hit
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA8620.1944862472051063No Hit
CACACACACACACACACACACACACACACACACACACACACACACACACA5950.13424514743275898No Hit
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC5850.13198892646750252No Hit
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT4710.10626800746357896No Hit
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG4700.10604238536705332No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)