FastQCFastQC Report
Thu 5 Jan 2023
EGAF00007231930

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007231930
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65444410
Sequences flagged as poor quality0
Sequence length100
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA1670410.25524105114554474No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGAATCCGTATCTCGTAT1600260.24452203022381894TruSeq Adapter, Index 7 (97% over 35bp)
CTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACG1184500.18099330408815664No Hit
GTCGATTTGGCGAGGGCGCTCCCGACGACGCACCGGGAGGAGGCCCTTCC1071790.16377105393722702No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT907270.1386321612495246No Hit
GGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCA903410.13804234769631202No Hit
CTCGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATC865820.13229854161722904No Hit
CAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAG788110.12042434181926309No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGAATCCGTATCGCGTAT753020.11506253933682037TruSeq Adapter, Index 7 (97% over 35bp)
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT690240.10546966501799007No Hit
CGGGGTCTCGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGC661720.10111176798751796No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)