FastQCFastQC Report
Sat 25 May 2024
EGAF00007246669

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007246669
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences108074253
Total Bases16.2 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATC1953000.18070909081370196No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT1257960.1163977510906321No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC1203670.11137435296453078No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)