FastQCFastQC Report
Thu 23 May 2024
EGAF00007246698

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007246698
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences101701800
Total Bases15.2 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATT1720490.1691700638533438No Hit
CGGAGGGCGAGGCCCGCGGCGGCGCCGCCGCCGCCGCGCGCTTCCCTCCG1157910.11385344212196834No Hit
CGGAGGGCGAGGCCCGCGGCGGCGCCGCCGCCGCGCGCTTCCCTCCGCAC1065420.10475920780163182No Hit
CGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGG1027280.101009028355447No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)