FastQCFastQC Report
Sat 25 May 2024
EGAF00007246729

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007246729
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences111446068
Total Bases16.7 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATC2183010.19588039660582732No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT1303180.11693369029403532No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC1157790.10388791823503365No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)