FastQCFastQC Report
Thu 23 May 2024
EGAF00007246731

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007246731
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences127708189
Total Bases19.1 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT3235460.2533478882861615No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC2696160.21111880303932587No Hit
CTCGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATC1877680.14702894267806116No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)