FastQCFastQC Report
Sat 25 May 2024
EGAF00007246743

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007246743
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences111948096
Total Bases16.7 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT2836140.253344192651566No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC2285500.20415711223887184No Hit
CTCGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATC1809670.16165259300167106No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)