FastQCFastQC Report
Thu 3 Nov 2022
EGAF00007249811

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007249811
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497968123
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATACGCAGTGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT31535790.6332893320563011No Hit
ATATACGCAGTTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA20441350.41049515131312936No Hit
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC7925480.15915637234474142No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCTGAAGCTATCTCGTATG6175900.12402199487777253TruSeq Adapter, Index 19 (97% over 37bp)
ATATACGCAGTGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC5717360.11481377493715596No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)