FastQCFastQC Report
Thu 3 Nov 2022
EGAF00007249815

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007249815
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480865714
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACAAATTGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT26293620.5467975618656813No Hit
AGAACAAATTGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA18204710.37858199222746No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCGGCTATGATCTCGTATG18164420.3777441283742679TruSeq Adapter, Index 7 (97% over 35bp)
AGAACAAATTGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC5078540.10561243715537598No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)