FastQCFastQC Report
Thu 3 Nov 2022
EGAF00007249824

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007249824
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489911869
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTTCAGAGCCGTGTAGATCTC37051590.756290923827363Illumina Single End PCR Primer 1 (96% over 31bp)
CTTGATCTCATGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT21089940.4304843653420448No Hit
CTTGATCTCATTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA16340890.33354754260913816No Hit
CTTGATCTCATGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5868100.11977868615385596No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)