FastQCFastQC Report
Thu 3 Nov 2022
EGAF00007249833

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007249833
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487733118
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTCTCGCGCATCTCGTATG66634461.3662074101763169TruSeq Adapter, Index 8 (97% over 35bp)
GCCACGCGTTAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT12693080.26024642435701895No Hit
GCCACGCGTTATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA5324510.10916851457275863No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)