FastQCFastQC Report
Thu 3 Nov 2022
EGAF00007249843

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007249843
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511923028
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGAGCCCGCCGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT26651680.5206188927293187No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGAGATTCCATCTCGTATG18061140.35280968059909196TruSeq Adapter, Index 7 (97% over 37bp)
TAGAGCCCGCCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA11503540.22471229795898146No Hit
TAGAGCCCGCCGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC10134580.19797077774747024No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)