FastQCFastQC Report
Thu 3 Nov 2022
EGAF00007249846

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007249846
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470787032
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCACGACGTAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT13239810.28122716005482495No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTTAAGATTAGTGTAGATCTC9629610.20454280482390175Illumina Single End PCR Primer 1 (96% over 31bp)
CGCACGACGTATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA8833900.18764110732769718No Hit
CGCACGACGTAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC6364720.13519318858383508No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)