FastQCFastQC Report
Thu 3 Nov 2022
EGAF00007249847

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007249847
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences519495933
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCACGACGTAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT20950800.4032909339446167No Hit
CGCACGACGTATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA12580220.2421620498037662No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACATTACTCGATCTCGTATG11921940.22949053578057557TruSeq Adapter, Index 27 (97% over 38bp)
CGCACGACGTAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC8431090.1622936670805467No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)