FastQCFastQC Report
Wed 16 Nov 2022
EGAF00007249866

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007249866
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479063839
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAATGATACAAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT22225720.46394067325962374No Hit
AAATGATACAATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA9624020.20089222388584416No Hit
AAATGATACAAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC6698180.13981810887629947No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTTAAGATTAGTGTAGATCTC5800590.12108177507424014Illumina Single End PCR Primer 1 (96% over 31bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)