FastQCFastQC Report
Thu 3 Nov 2022
EGAF00007249868

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007249868
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484762513
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAATGATACAAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT22406010.4622059131870207No Hit
AAATGATACAATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA9661050.19929449453943235No Hit
AAATGATACAAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC6815470.14059399844723552No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTTAAGATTAGTGTAGATCTC5636630.11627611147399099Illumina Single End PCR Primer 1 (96% over 31bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)