FastQCFastQC Report
Thu 3 Nov 2022
EGAF00007249869

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007249869
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479562056
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGAATTCGTATCTCGTATG29502970.6152065125018982TruSeq Adapter, Index 7 (97% over 34bp)
TTAACAAGTATGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT18615210.3881710357835316No Hit
TTAACAAGTATTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA11623440.24237613995048848No Hit
TTAACAAGTATGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC4833180.10078320291461926No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)