FastQCFastQC Report
Thu 3 Nov 2022
EGAF00007249880

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007249880
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457003746
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTACGTCCTGGTGTAGATCTC27539190.602603156780251Illumina Single End PCR Primer 1 (96% over 32bp)
TACCGAGTCTCGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT25118570.5496359760692202No Hit
TACCGAGTCTCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA19938580.4362892027585262No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)