FastQCFastQC Report
Thu 3 Nov 2022
EGAF00007249881

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007249881
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497071560
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TAAATACCATCGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT20873110.4199216305998275No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTAATGCGCATCTCGTATG19414630.390580181251971TruSeq Adapter, Index 3 (97% over 35bp)
TAAATACCATCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA12708140.2556601709419867No Hit
TAAATACCATCGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5025060.10109329127580746No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)