FastQCFastQC Report
Thu 3 Nov 2022
EGAF00007256305

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007256305
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences526629765
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCACATTGGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT32701780.6209633821210239No Hit
CTGCACATTGGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA17919090.3402597268690273No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACATTCAGAAATCTCGTATG8808480.1672613396624097TruSeq Adapter, Index 13 (97% over 37bp)
CTGCACATTGGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC6356830.12070776136248204No Hit
CTGCACATTGGGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5632730.10695806379269125No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)