FastQCFastQC Report
Thu 3 Nov 2022
EGAF00007256308

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007256308
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences524370789
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCACATTGGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT27078330.5163966141523569No Hit
CTGCACATTGGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA20576690.3924072513505324No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTTCAGAGCCGTGTAGATCTC8863420.16902962914663808Illumina Single End PCR Primer 1 (96% over 31bp)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN6411280.12226615468467676No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)